Logging started at 07:42:08 on 23 Jan 2024
QIIME version: 1.9.1

qiime_config values:
pick_otus_reference_seqs_fp	/home/qiita/.virtualenvs/qp-target-gene2/lib/python2.7/site-packages/qiime_default_reference/gg_13_8_otus/rep_set/97_otus.fasta
sc_queue	all.q
pynast_template_alignment_fp	/home/qiita/.virtualenvs/qp-target-gene2/lib/python2.7/site-packages/qiime_default_reference/gg_13_8_otus/rep_set_aligned/85_otus.pynast.fasta
cluster_jobs_fp	/home/qiita/cluster_jobs_8.py
assign_taxonomy_reference_seqs_fp	/home/qiita/.virtualenvs/qp-target-gene2/lib/python2.7/site-packages/qiime_default_reference/gg_13_8_otus/rep_set/97_otus.fasta
torque_queue	friendlyq
jobs_to_start	1
denoiser_min_per_core	50
assign_taxonomy_id_to_taxonomy_fp	/home/qiita/.virtualenvs/qp-target-gene2/lib/python2.7/site-packages/qiime_default_reference/gg_13_8_otus/taxonomy/97_otu_taxonomy.txt
temp_dir	/projects/qiita_data/tmp/
blastall_fp	blastall
seconds_to_sleep	1

parameter file values:
parallel:jobs_to_start	1
pick_otus:threads	5
pick_otus:sortmerna_coverage	0.97
pick_otus:otu_picking_method	sortmerna
pick_otus:sortmerna_max_pos	10000
pick_otus:similarity	0.97

Input file md5 sums:
/qmounts/qiita_data/working_dir/72ce5711-f802-47be-b166-3db5fb55cebd/seqs.fna: 9d047cc877e722f0df52f1586726f668
/databases/gg/13_8/rep_set/97_otus.fasta: 50b2269712b3738afb41892bed936c29
/databases/gg/13_8/taxonomy/97_otu_taxonomy.txt: 56ef15dccf2e931ec173f4f977ed649b

Forcing --suppress_new_clusters as this is closed-reference OTU picking.

Executing commands.

# Pick OTUs command 
pick_otus.py -i /qmounts/qiita_data/working_dir/72ce5711-f802-47be-b166-3db5fb55cebd/seqs.fna -o /qmounts/qiita_data/working_dir/72ce5711-f802-47be-b166-3db5fb55cebd/cr_otus/sortmerna_picked_otus -r /databases/gg/13_8/rep_set/97_otus.fasta -m sortmerna --threads 5 --sortmerna_coverage 0.97 --otu_picking_method sortmerna --sortmerna_max_pos 10000 --similarity 0.97 --suppress_new_clusters

Stdout:

Stderr:

# Make OTU table command 
make_otu_table.py -i /qmounts/qiita_data/working_dir/72ce5711-f802-47be-b166-3db5fb55cebd/cr_otus/sortmerna_picked_otus/seqs_otus.txt -t /databases/gg/13_8/taxonomy/97_otu_taxonomy.txt -o /qmounts/qiita_data/working_dir/72ce5711-f802-47be-b166-3db5fb55cebd/cr_otus/otu_table.biom 

Stdout:

Stderr:


Logging stopped at 08:17:34 on 23 Jan 2024
