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ID 436: Taxonomy-based feature table filter. [filter_table]
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-q qiita -l nodes=1:ppn=1 -l mem=8gb -l walltime=32:00:00 |
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ID 449: Filter features from a table based on abundance and prevalence [filter_features_conditionally]
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-q qiita -l nodes=1:ppn=1 -l mem=8gb -l walltime=32:00:00 |
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ID 455: Transpose a feature table. [transpose]
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-q qiita -l nodes=1:ppn=1 -l mem=8gb -l walltime=32:00:00 |
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ID 482: Alpha diversity correlation [alpha_correlation]
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-q qiita -l nodes=1:ppn=1 -l mem=8gb -l walltime=32:00:00 |
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ID 437: Visualize taxonomy with an interactive bar plot [barplot]
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-q qiita -l nodes=1:ppn=1 -l mem=24gb -l walltime=100:00:00 |
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ID 450: Renames sample or feature ids in a table [rename_ids]
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-q qiita -l nodes=1:ppn=1 -l mem=8gb -l walltime=32:00:00 |
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ID 456: Rarefy table [rarefy]
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-q qiita -l nodes=1:ppn=1 -l mem=8gb -l walltime=32:00:00 |
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ID 468: Paired difference testing and boxplots [pairwise_differences]
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-q qiita -l nodes=1:ppn=1 -l mem=8gb -l walltime=32:00:00 |
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ID 469: Nonparametric microbial interdependence test [nmit]
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-q qiita -l nodes=1:ppn=1 -l mem=8gb -l walltime=32:00:00 |
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ID 484: Pre-fitted sklearn-based taxonomy classifier [classify_sklearn]
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-q qiita -l nodes=1:ppn=5 -l mem=84gb -l walltime=150:00:00 |
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ID 438: Collapse features by their taxonomy at the specified level [collapse]
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-q qiita -l nodes=1:ppn=1 -l mem=8gb -l walltime=32:00:00 |
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ID 451: Filter samples from table [filter_samples]
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-q qiita -l nodes=1:ppn=1 -l mem=8gb -l walltime=32:00:00 |
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ID 457: Beta diversity (phylogenetic) [beta_phylogenetic]
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-q qiita -l nodes=1:ppn=5 -l mem=8gb -l walltime=35:00:00 |
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ID 470: Compute first differences or difference from baseline between sequential states [first_differences]
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-q qiita -l nodes=1:ppn=1 -l mem=8gb -l walltime=32:00:00 |
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ID 439: Split a feature table into training and testing sets. [split_table]
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-q qiita -l nodes=1:ppn=1 -l mem=8gb -l walltime=32:00:00 |
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ID 458: Alpha diversity (phylogenetic) [alpha_phylogenetic]
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-q qiita -l nodes=1:ppn=1 -l mem=8gb -l walltime=32:00:00 |
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ID 440: Generate heatmap of important features. [heatmap]
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-q qiita -l nodes=1:ppn=1 -l mem=8gb -l walltime=32:00:00 |
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ID 441: Nested cross-validated supervised learning classifier. [classify_samples_ncv]
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-q qiita -l nodes=1:ppn=1 -l mem=8gb -l walltime=32:00:00 |
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ID 452: Generate a heatmap representation of a feature table [heatmap]
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-q qiita -l nodes=1:ppn=1 -l mem=8gb -l walltime=32:00:00 |
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ID 460: Core diversity metrics (non-phylogenetic) [core_metrics]
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-q qiita -l nodes=1:ppn=5 -l mem=16gb -l walltime=35:00:00 |
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ID 475: Filter samples from a distance matrix. [filter_distance_matrix]
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-q qiita -l nodes=1:ppn=1 -l mem=8gb -l walltime=32:00:00 |
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ID 442: Nested cross-validated supervised learning regressor. [regress_samples_ncv]
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-q qiita -l nodes=1:ppn=1 -l mem=8gb -l walltime=32:00:00 |
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ID 453: Convert to relative frequencies [relative_frequency]
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-q qiita -l nodes=1:ppn=1 -l mem=8gb -l walltime=32:00:00 |
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ID 461: Core diversity metrics (phylogenetic and non-phylogenetic) [core_metrics_phylogenetic]
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-q qiita -l nodes=1:ppn=5 -l mem=40gb -l walltime=35:00:00 |
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ID 472: Run k-nearest-neighbors on a labeled distance matrix. [classify_samples_from_dist]
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-q qiita -l nodes=1:ppn=1 -l mem=8gb -l walltime=32:00:00 |
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ID 476: Beta diversity group significance [beta_group_significance]
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-q qiita -l nodes=1:ppn=1 -l mem=8gb -l walltime=32:00:00 |
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ID 454: Filter features from table [filter_features]
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-q qiita -l nodes=1:ppn=1 -l mem=8gb -l walltime=32:00:00 |
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ID 477: Principal Coordinate Analysis [pcoa]
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-q qiita -l nodes=1:ppn=1 -l mem=8gb -l walltime=32:00:00 |
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ID 480: bioenv [bioenv]
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-q qiita -l nodes=1:ppn=1 -l mem=8gb -l walltime=32:00:00 |
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ID 443: Convert (and merge) positive numeric metadata (in)to feature table. [metatable]
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-q qiita -l nodes=1:ppn=1 -l mem=8gb -l walltime=32:00:00 |
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ID 459: Beta diversity rarefaction [beta_rarefaction]
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-q qiita -l nodes=1:ppn=1 -l mem=8gb -l walltime=32:00:00 |
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ID 462: Alpha diversity [alpha]
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-q qiita -l nodes=1:ppn=1 -l mem=16gb -l walltime=3:00:00 |
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ID 444: Remove features from table if they're not present in tree. [filter_table]
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-q qiita -l nodes=1:ppn=1 -l mem=8gb -l walltime=32:00:00 |
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ID 463: Beta diversity [beta]
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-q qiita -l nodes=1:ppn=5 -l mem=16gb -l walltime=35:00:00 |
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ID 464: Alpha rarefaction curves [alpha_rarefaction]
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-q qiita -l nodes=1:ppn=1 -l mem=8gb -l walltime=100:00:00 |
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ID 483: Alpha diversity comparisons [alpha_group_significance]
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-q qiita -l nodes=1:ppn=1 -l mem=8gb -l walltime=32:00:00 |
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ID 445: Convert to presence/absence [presence_absence]
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-q qiita -l nodes=1:ppn=1 -l mem=8gb -l walltime=32:00:00 |
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ID 465: Add pseudocount to table [add_pseudocount]
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-q qiita -l nodes=1:ppn=1 -l mem=8gb -l walltime=32:00:00 |
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ID 446: Summarize table [summarize]
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-q qiita -l nodes=1:ppn=1 -l mem=8gb -l walltime=32:00:00 |
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ID 447: Identify core features in table [core_features]
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-q qiita -l nodes=1:ppn=1 -l mem=8gb -l walltime=32:00:00 |
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ID 448: Subsample table [subsample]
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-q qiita -l nodes=1:ppn=1 -l mem=8gb -l walltime=32:00:00 |
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ID 466: Generate interactive volatility plot [volatility]
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-q qiita -l nodes=1:ppn=1 -l mem=8gb -l walltime=32:00:00 |
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ID 467: Linear mixed effects modeling [linear_mixed_effects]
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-q qiita -l nodes=1:ppn=1 -l mem=8gb -l walltime=32:00:00 |
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ID 471: Plot longitudinal feature volatility and importances [plot_feature_volatility]
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-q qiita -l nodes=1:ppn=1 -l mem=8gb -l walltime=32:00:00 |
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ID 473: Paired pairwise distance testing and boxplots [pairwise_distances]
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-q qiita -l nodes=1:ppn=1 -l mem=8gb -l walltime=32:00:00 |
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ID 474: Compute first distances or distance from baseline between sequential states [first_distances]
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-q qiita -l nodes=1:ppn=1 -l mem=8gb -l walltime=32:00:00 |
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ID 478: Beta diversity correlation [beta_correlation]
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-q qiita -l nodes=1:ppn=1 -l mem=8gb -l walltime=32:00:00 |
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ID 481: Visualize and Interact with Principal Coordinates Analysis Plots [plot]
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-q qiita -l nodes=1:ppn=1 -l mem=8gb -l walltime=32:00:00 |
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ID 479: adonis PERMANOVA test for beta group significance [adonis]
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-q qiita -l nodes=1:ppn=1 -l mem=8gb -l walltime=32:00:00 |
