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Urobiome Benchmarking - ID 14383
Alias: PLUS Urobiome Validation
Abstract: Effects of Assay Assure preservative on urine under variable temperature conditions
Description: Samples of urine from volunteers for benchmarking
Owner: mackenzie.m.bryant@gmail.com
Publications:
PI: Rob Knight (UCSD)
EBI: ERP138439 (submitted)
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Artifacts
| ID |
Data Type |
Platform |
Target Gene |
Target Subfragment |
Algorithm |
|
141790
|
16S |
Illumina |
16S rRNA |
V4
|
Trimming (length: 150) |
|
141791
|
16S |
Illumina |
16S rRNA |
V4
|
Trimming (length: 90) |
|
141792
|
16S |
Illumina |
16S rRNA |
V4
|
Trimming (length: 100) |
|
142131
|
16S |
Illumina |
16S rRNA |
V4
|
Trimming (length: 150) |
|
142150
|
16S |
Illumina |
16S rRNA |
V4
|
Trimming (length: 90) |
|
142151
|
16S |
Illumina |
16S rRNA |
V4
|
Trimming (length: 100) |
|
141795
|
16S |
Illumina |
16S rRNA |
V4
|
Pick closed-reference OTUs (reference-seq: /databases/gg/13_8/rep_set/97_otus.fasta) | Trimming (length: 90) |
|
141796
|
16S |
Illumina |
16S rRNA |
V4
|
Pick closed-reference OTUs (reference-seq: /databases/gg/13_8/rep_set/97_otus.fasta) | Trimming (length: 150) |
|
141797
|
16S |
Illumina |
16S rRNA |
V4
|
Pick closed-reference OTUs (reference-seq: /databases/gg/13_8/rep_set/97_otus.fasta) | Trimming (length: 100) |
|
142152
|
16S |
Illumina |
16S rRNA |
V4
|
Pick closed-reference OTUs (reference-seq: /databases/gg/13_8/rep_set/97_otus.fasta) | Trimming (length: 150) |
|
142153
|
16S |
Illumina |
16S rRNA |
V4
|
Pick closed-reference OTUs (reference-seq: /databases/gg/13_8/rep_set/97_otus.fasta) | Trimming (length: 90) |
|
142154
|
16S |
Illumina |
16S rRNA |
V4
|
Pick closed-reference OTUs (reference-seq: /databases/gg/13_8/rep_set/97_otus.fasta) | Trimming (length: 100) |
|
141789
|
16S |
Illumina |
16S rRNA |
V4
|
Split libraries FASTQ |
|
142129
|
16S |
Illumina |
16S rRNA |
V4
|
Split libraries FASTQ |
|
141798
|
16S |
Illumina |
16S rRNA |
V4
|
Deblur 2021.09 (Reference phylogeny for SEPP: Greengenes_13.8, BIOM: reference-hit.biom) | Trimming (length: 100) |
|
141799
|
16S |
Illumina |
16S rRNA |
V4
|
Deblur 2021.09 (Reference phylogeny for SEPP: Greengenes_13.8, BIOM: all.biom) | Trimming (length: 100) |
|
141801
|
16S |
Illumina |
16S rRNA |
V4
|
Deblur 2021.09 (Reference phylogeny for SEPP: Greengenes_13.8, BIOM: all.biom) | Trimming (length: 90) |
|
141802
|
16S |
Illumina |
16S rRNA |
V4
|
Deblur 2021.09 (Reference phylogeny for SEPP: Greengenes_13.8, BIOM: reference-hit.biom) | Trimming (length: 90) |
|
141804
|
16S |
Illumina |
16S rRNA |
V4
|
Deblur 2021.09 (Reference phylogeny for SEPP: Greengenes_13.8, BIOM: reference-hit.biom) | Trimming (length: 150) |
|
141805
|
16S |
Illumina |
16S rRNA |
V4
|
Deblur 2021.09 (Reference phylogeny for SEPP: Greengenes_13.8, BIOM: all.biom) | Trimming (length: 150) |
|
142133
|
16S |
Illumina |
16S rRNA |
V4
|
Deblur 2021.09 (Reference phylogeny for SEPP: Greengenes_13.8, BIOM: all.biom) | Trimming (length: 150) |
|
142134
|
16S |
Illumina |
16S rRNA |
V4
|
Deblur 2021.09 (Reference phylogeny for SEPP: Greengenes_13.8, BIOM: reference-hit.biom) | Trimming (length: 150) |
|
142155
|
16S |
Illumina |
16S rRNA |
V4
|
Deblur 2021.09 (Reference phylogeny for SEPP: Greengenes_13.8, BIOM: reference-hit.biom) | Trimming (length: 90) |
|
142156
|
16S |
Illumina |
16S rRNA |
V4
|
Deblur 2021.09 (Reference phylogeny for SEPP: Greengenes_13.8, BIOM: all.biom) | Trimming (length: 90) |
|
142157
|
16S |
Illumina |
16S rRNA |
V4
|
Deblur 2021.09 (Reference phylogeny for SEPP: Greengenes_13.8, BIOM: reference-hit.biom) | Trimming (length: 100) |
|
142158
|
16S |
Illumina |
16S rRNA |
V4
|
Deblur 2021.09 (Reference phylogeny for SEPP: Greengenes_13.8, BIOM: all.biom) | Trimming (length: 100) |
|
141781
|
16S |
Illumina |
16S rRNA |
V4
|
|
|
142127
|
16S |
Illumina |
16S rRNA |
V4
|
|
