|
ID 713: Pre-fitted sklearn-based taxonomy classifier [classify_sklearn]
|
-p qiita -N 1 -n 5 --mem 200gb --time 150:00:00 |
|
ID 728: Identify core features in table [core_features]
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-p qiita -N 1 -n 1 --mem 8gb --time 32:00:00 |
|
ID 714: Visualize and Interact with Principal Coordinates Analysis Biplot [biplot]
|
-p qiita -N 1 -n 1 --mem 8gb --time 32:00:00 |
|
ID 739: Nested cross-validated supervised learning classifier. [classify_samples_ncv]
|
-p qiita -N 1 -n 1 --mem 64gb --time 30:00:00 |
|
ID 718: Beta diversity [beta]
|
-p qiita -N 1 -n 1 --mem 40gb --time 400:00:00 |
|
ID 733: Summarize table [summarize]
|
-p qiita -N 1 -n 1 --mem 8gb --time 32:00:00 |
|
ID 737: Mislabelings within dataset [within_dataset]
|
-p qiita -N 1 -n 1 --mem 8gb --time 32:00:00 |
|
ID 721: Beta diversity (phylogenetic) [beta_phylogenetic]
|
-p qiita -N 1 -n 5 --mem 50gb --time 35:00:00 |
|
ID 758: Filter samples from a distance matrix. [filter_distance_matrix]
|
-p qiita -N 1 -n 1 --mem 16gb --time 50:00:00 |
|
ID 722: Alpha diversity [alpha]
|
-p qiita -N 1 -n 1 --mem 32gb --time 30:00:00 |
|
ID 720: Core diversity metrics (non-phylogenetic) [core_metrics]
|
-p qiita -N 1 -n 5 --mem 16gb --time 35:00:00 |
|
ID 735: Filter features from a table based on abundance and prevalence [filter_features_conditionally]
|
-p qiita -N 1 -n 1 --mem 8gb --time 32:00:00 |
|
ID 729: Rarefy table [rarefy]
|
-p qiita -N 1 -n 1 --mem 15gb --time 50:00:00 |
|
ID 726: Convert to relative frequencies [relative_frequency]
|
-p qiita -N 1 -n 1 --mem 8gb --time 32:00:00 |
|
ID 736: Mislabelings against dataset [against_dataset]
|
-p qiita -N 1 -n 1 --mem 8gb --time 32:00:00 |
|
ID 738: Remove features from table if they're not present in tree. [filter_table]
|
-p qiita -N 1 -n 1 --mem 8gb --time 32:00:00 |
|
ID 740: Split a feature table into training and testing sets. [split_table]
|
-p qiita -N 1 -n 1 --mem 8gb --time 32:00:00 |
|
ID 752: Apply ANCOM to identify features that differ in abundance. [ancom]
|
-p qiita -N 1 -n 1 --mem 8gb --time 3-10:00:00 |
|
ID 767: Alpha diversity comparisons [alpha_group_significance]
|
-p qiita -N 1 -n 1 --mem 25gb --time 100:00:00 |
|
ID 716: Alpha rarefaction curves [alpha_rarefaction]
|
-p qiita -N 1 -n 1 --mem 60gb --time 400:00:00 |
|
ID 715: Add pseudocount to table. [add_pseudocount]
|
-p qiita -N 1 -n 1 --mem 8gb --time 32:00:00 |
|
ID 719: Core diversity metrics (phylogenetic and non-phylogenetic) [core_metrics_phylogenetic]
|
-p qiita -N 1 -n 5 --mem 40gb --time 35:00:00 |
|
ID 734: Subsample table [subsample]
|
-p qiita -N 1 -n 1 --mem 8gb --time 32:00:00 |
|
ID 717: Beta diversity rarefaction [beta_rarefaction]
|
-p qiita -N 1 -n 1 --mem 100gb --time 50:00:00 |
|
ID 725: Convert to presence/absence [presence_absence]
|
-p qiita -N 1 -n 1 --mem 8gb --time 32:00:00 |
|
ID 723: Alpha diversity (phylogenetic) [alpha_phylogenetic]
|
-p qiita -N 1 -n 1 --mem 32gb --time 10:00:00 |
|
ID 724: Filter samples from table [filter_samples]
|
-p qiita -N 1 -n 1 --mem 125gb --time 50:00:00 |
|
ID 759: t-distributed stochastic neighbor embedding [tsne]
|
-p qiita -N 1 -n 1 --mem 8gb --time 32:00:00 |
|
ID 761: Beta diversity group significance [beta_group_significance]
|
-p qiita -N 1 -n 1 --mem 32gb --time 50:00:00 |
|
ID 765: UMAP Embedding [embed]
|
-p qiita -N 1 -n 1 --mem 8gb --time 32:00:00 |
|
ID 727: Generate a heatmap representation of a feature table [heatmap]
|
-p qiita -N 1 -n 1 --mem 8gb --time 32:00:00 |
|
ID 731: Filter features from table [filter_features]
|
-p qiita -N 1 -n 1 --mem 8gb --time 32:00:00 |
|
ID 748: Compute first differences or difference from baseline between sequential states [first_differences]
|
-p qiita -N 1 -n 1 --mem 8gb --time 32:00:00 |
|
ID 770: Filter features against reference [filter_features]
|
-p qiita -N 1 -n 1 --mem 32gb --time 32:00:00 |
|
ID 730: Transpose a feature table. [transpose]
|
-p qiita -N 1 -n 1 --mem 8gb --time 32:00:00 |
|
ID 757: adonis PERMANOVA test for beta group significance [adonis]
|
-p qiita -N 1 -n 1 --mem 80gb --time 50:00:00 |
|
ID 732: Renames sample or feature ids in a table [rename_ids]
|
-p qiita -N 1 -n 1 --mem 8gb --time 32:00:00 |
|
ID 742: Convert (and merge) positive numeric metadata (in)to feature table. [metatable]
|
-p qiita -N 1 -n 1 --mem 8gb --time 32:00:00 |
|
ID 755: Apply the Mantel test to two distance matrices [mantel]
|
-p qiita -N 1 -n 1 --mem 8gb --time 32:00:00 |
|
ID 741: Nested cross-validated supervised learning regressor. [regress_samples_ncv]
|
-p qiita -N 1 -n 1 --mem 8gb --time 32:00:00 |
|
ID 753: Principal Coordinate Analysis [pcoa]
|
-p qiita -N 1 -n 1 --mem 70gb --time 50:00:00 |
|
ID 745: Visualize taxonomy with an interactive bar plot [barplot]
|
-p qiita -N 1 -n 1 --mem 24gb --time 100:00:00 |
|
ID 763: Compute first distances or distance from baseline between sequential states [first_distances]
|
-p qiita -N 1 -n 1 --mem 8gb --time 32:00:00 |
|
ID 744: Collapse features by their taxonomy at the specified level [collapse]
|
-p qiita -N 1 -n 1 --mem 8gb --time 32:00:00 |
|
ID 762: Paired pairwise distance testing and boxplots [pairwise_distances]
|
-p qiita -N 1 -n 1 --mem 8gb --time 32:00:00 |
|
ID 743: Taxonomy-based feature table filter. [filter_table]
|
-p qiita -N 1 -n 1 --mem 8gb --time 32:00:00 |
|
ID 764: Run k-nearest-neighbors on a labeled distance matrix. [classify_samples_from_dist]
|
-p qiita -N 1 -n 1 --mem 8gb --time 32:00:00 |
|
ID 746: Principal Coordinate Analysis Biplot [pcoa_biplot]
|
-p qiita -N 1 -n 1 --mem 8gb --time 32:00:00 |
|
ID 749: Generate interactive volatility plot [volatility]
|
-p qiita -N 1 -n 1 --mem 8gb --time 32:00:00 |
|
ID 766: Visualize and Interact with Principal Coordinates Analysis Plots [plot]
|
-p qiita -N 1 -n 1 --mem 35gb --time 1:00:00 |
|
ID 747: Linear mixed effects modeling [linear_mixed_effects]
|
-p qiita -N 1 -n 1 --mem 8gb --time 32:00:00 |
|
ID 768: Alpha diversity correlation [alpha_correlation]
|
-p qiita -N 1 -n 1 --mem 8gb --time 32:00:00 |
|
ID 750: Paired difference testing and boxplots [pairwise_differences]
|
-p qiita -N 1 -n 1 --mem 8gb --time 32:00:00 |
|
ID 751: Nonparametric microbial interdependence test [nmit]
|
-p qiita -N 1 -n 1 --mem 48gb --time 250:00:00 |
|
ID 769: Make a confusion matrix from sample classifier predictions. [confusion_matrix]
|
-p qiita -N 1 -n 1 --mem 8gb --time 32:00:00 |
|
ID 756: bioenv [bioenv]
|
-p qiita -N 1 -n 1 --mem 8gb --time 32:00:00 |
|
ID 760: Uniform Manifold Approximation and Projection [umap]
|
-p qiita -N 1 -n 1 --mem 8gb --time 32:00:00 |
|
ID 754: Beta diversity correlation [beta_correlation]
|
-p qiita -N 1 -n 1 --mem 8gb --time 32:00:00 |
|
ID 771: Non V4 16S sequence assessment [non_v4_16s]
|
-p qiita -N 1 -n 1 --mem 8gb --time 32:00:00 |
