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ID 597: Pre-fitted sklearn-based taxonomy classifier [classify_sklearn]
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-q qiita -l nodes=1:ppn=5 -l mem=200gb -l walltime=150:00:00 |
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ID 607: Taxonomy-based feature table filter. [filter_table]
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-q qiita -l nodes=1:ppn=1 -l mem=8gb -l walltime=32:00:00 |
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ID 632: Compute first differences or difference from baseline between sequential states [first_differences]
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-q qiita -l nodes=1:ppn=1 -l mem=8gb -l walltime=32:00:00 |
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ID 599: Beta diversity rarefaction [beta_rarefaction]
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-q qiita -l nodes=1:ppn=1 -l mem=100gb -l walltime=50:00:00 |
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ID 618: Summarize table [summarize]
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-q qiita -l nodes=1:ppn=1 -l mem=8gb -l walltime=32:00:00 |
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ID 637: Beta diversity correlation [beta_correlation]
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-q qiita -l nodes=1:ppn=1 -l mem=8gb -l walltime=32:00:00 |
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ID 600: Core diversity metrics (non-phylogenetic) [core_metrics]
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-q qiita -l nodes=1:ppn=5 -l mem=16gb -l walltime=35:00:00 |
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ID 619: Filter samples from table [filter_samples]
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-q qiita -l nodes=1:ppn=1 -l mem=25gb -l walltime=50:00:00 |
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ID 601: Core diversity metrics (phylogenetic and non-phylogenetic) [core_metrics_phylogenetic]
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-q qiita -l nodes=1:ppn=5 -l mem=40gb -l walltime=35:00:00 |
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ID 620: Generate a heatmap representation of a feature table [heatmap]
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-q qiita -l nodes=1:ppn=1 -l mem=8gb -l walltime=32:00:00 |
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ID 639: Apply the Mantel test to two distance matrices [mantel]
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-q qiita -l nodes=1:ppn=1 -l mem=8gb -l walltime=32:00:00 |
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ID 602: Alpha diversity (phylogenetic) [alpha_phylogenetic]
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-q qiita -l nodes=1:ppn=1 -l mem=8gb -l walltime=32:00:00 |
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ID 621: Convert to presence/absence [presence_absence]
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-q qiita -l nodes=1:ppn=1 -l mem=8gb -l walltime=32:00:00 |
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ID 603: Beta diversity [beta]
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-q qiita -l nodes=1:ppn=1 -l mem=40gb -l walltime=400:00:00 |
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ID 640: Filter samples from a distance matrix. [filter_distance_matrix]
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-q qiita -l nodes=1:ppn=1 -l mem=16gb -l walltime=50:00:00 |
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ID 604: Alpha diversity [alpha]
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-q qiita -l nodes=1:ppn=1 -l mem=16gb -l walltime=30:00:00 |
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ID 623: Convert (and merge) positive numeric metadata (in)to feature table. [metatable]
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-q qiita -l nodes=1:ppn=1 -l mem=8gb -l walltime=32:00:00 |
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ID 605: Beta diversity (phylogenetic) [beta_phylogenetic]
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-q qiita -l nodes=1:ppn=5 -l mem=50gb -l walltime=35:00:00 |
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ID 606: Collapse features by their taxonomy at the specified level [collapse]
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-q qiita -l nodes=1:ppn=1 -l mem=8gb -l walltime=32:00:00 |
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ID 608: Visualize taxonomy with an interactive bar plot [barplot]
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-q qiita -l nodes=1:ppn=1 -l mem=24gb -l walltime=100:00:00 |
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ID 624: Split a feature table into training and testing sets. [split_table]
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-q qiita -l nodes=1:ppn=1 -l mem=8gb -l walltime=32:00:00 |
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ID 643: Compute first distances or distance from baseline between sequential states [first_distances]
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-q qiita -l nodes=1:ppn=1 -l mem=8gb -l walltime=32:00:00 |
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ID 644: Run k-nearest-neighbors on a labeled distance matrix. [classify_samples_from_dist]
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-q qiita -l nodes=1:ppn=1 -l mem=8gb -l walltime=32:00:00 |
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ID 609: Remove features from table if they're not present in tree. [filter_table]
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-q qiita -l nodes=1:ppn=1 -l mem=8gb -l walltime=32:00:00 |
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ID 626: Nested cross-validated supervised learning classifier. [classify_samples_ncv]
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-q qiita -l nodes=1:ppn=1 -l mem=8gb -l walltime=32:00:00 |
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ID 627: Principal Coordinate Analysis Biplot [pcoa_biplot]
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-q qiita -l nodes=1:ppn=1 -l mem=8gb -l walltime=32:00:00 |
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ID 628: Generate interactive volatility plot [volatility]
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-q qiita -l nodes=1:ppn=1 -l mem=8gb -l walltime=32:00:00 |
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ID 647: Alpha diversity correlation [alpha_correlation]
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-q qiita -l nodes=1:ppn=1 -l mem=8gb -l walltime=32:00:00 |
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ID 646: Visualize and Interact with Principal Coordinates Analysis Plots [plot]
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-q qiita -l nodes=1:ppn=1 -l mem=8gb -l walltime=32:00:00 |
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ID 610: Add pseudocount to table [add_pseudocount]
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-q qiita -l nodes=1:ppn=1 -l mem=8gb -l walltime=32:00:00 |
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ID 629: Linear mixed effects modeling [linear_mixed_effects]
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-q qiita -l nodes=1:ppn=1 -l mem=8gb -l walltime=32:00:00 |
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ID 648: Alpha diversity comparisons [alpha_group_significance]
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-q qiita -l nodes=1:ppn=1 -l mem=15gb -l walltime=100:00:00 |
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ID 611: Renames sample or feature ids in a table [rename_ids]
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-q qiita -l nodes=1:ppn=1 -l mem=8gb -l walltime=32:00:00 |
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ID 630: Paired difference testing and boxplots [pairwise_differences]
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-q qiita -l nodes=1:ppn=1 -l mem=8gb -l walltime=32:00:00 |
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ID 649: Make a confusion matrix from sample classifier predictions. [confusion_matrix]
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-q qiita -l nodes=1:ppn=1 -l mem=8gb -l walltime=32:00:00 |
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ID 613: Filter features from table [filter_features]
|
-q qiita -l nodes=1:ppn=1 -l mem=8gb -l walltime=32:00:00 |
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ID 612: Convert to relative frequencies [relative_frequency]
|
-q qiita -l nodes=1:ppn=1 -l mem=8gb -l walltime=32:00:00 |
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ID 631: Nonparametric microbial interdependence test [nmit]
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-q qiita -l nodes=1:ppn=1 -l mem=8gb -l walltime=32:00:00 |
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ID 633: Uniform Manifold Approximation and Projection [umap]
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-q qiita -l nodes=1:ppn=1 -l mem=8gb -l walltime=32:00:00 |
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ID 614: Subsample table [subsample]
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-q qiita -l nodes=1:ppn=1 -l mem=8gb -l walltime=32:00:00 |
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ID 616: Filter features from a table based on abundance and prevalence [filter_features_conditionally]
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-q qiita -l nodes=1:ppn=1 -l mem=8gb -l walltime=32:00:00 |
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ID 634: bioenv [bioenv]
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-q qiita -l nodes=1:ppn=1 -l mem=8gb -l walltime=32:00:00 |
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ID 645: UMAP Embedding [embed]
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-q qiita -l nodes=1:ppn=1 -l mem=8gb -l walltime=32:00:00 |
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ID 635: t-distributed stochastic neighbor embedding [tsne]
|
-q qiita -l nodes=1:ppn=1 -l mem=8gb -l walltime=32:00:00 |
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ID 598: Alpha rarefaction curves [alpha_rarefaction]
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-q qiita -l nodes=1:ppn=1 -l mem=40gb -l walltime=400:00:00 |
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ID 617: Transpose a feature table. [transpose]
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-q qiita -l nodes=1:ppn=1 -l mem=8gb -l walltime=32:00:00 |
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ID 636: Beta diversity group significance [beta_group_significance]
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-q qiita -l nodes=1:ppn=1 -l mem=8gb -l walltime=32:00:00 |
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ID 638: Principal Coordinate Analysis [pcoa]
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-q qiita -l nodes=1:ppn=1 -l mem=70gb -l walltime=50:00:00 |
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ID 622: Rarefy table [rarefy]
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-q qiita -l nodes=1:ppn=1 -l mem=15gb -l walltime=50:00:00 |
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ID 641: adonis PERMANOVA test for beta group significance [adonis]
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-q qiita -l nodes=1:ppn=1 -l mem=80gb -l walltime=50:00:00 |
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ID 642: Paired pairwise distance testing and boxplots [pairwise_distances]
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-q qiita -l nodes=1:ppn=1 -l mem=8gb -l walltime=32:00:00 |
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ID 615: Identify core features in table [core_features]
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-q qiita -l nodes=1:ppn=1 -l mem=8gb -l walltime=32:00:00 |
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ID 625: Nested cross-validated supervised learning regressor. [regress_samples_ncv]
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-q qiita -l nodes=1:ppn=1 -l mem=8gb -l walltime=32:00:00 |
