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ID 779: Core diversity metrics (phylogenetic and non-phylogenetic) [core_metrics_phylogenetic]
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-p qiita -N 1 -n 1 --mem 100gb --time 12:00:00 |
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ID 776: Core diversity metrics (non-phylogenetic) [core_metrics]
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-p qiita -N 1 -n 1 --mem 6gb --time 1:00:00 |
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ID 774: Visualize and Interact with Principal Coordinates Analysis Biplot [biplot]
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-p qiita -N 1 -n 1 --mem 4gb --time 4:00:00 |
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ID 775: Add pseudocount to table. [add_pseudocount]
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-p qiita -N 1 -n 1 --mem 4gb --time 00:15:00 |
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ID 812: Apply ANCOM to identify features that differ in abundance. [ancom]
|
-p qiita -N 1 -n 1 --mem 7gb --time 40:00:00 |
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ID 783: Beta diversity (phylogenetic) [beta_phylogenetic]
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-p qiita -N 1 -n 5 --mem 13*(2**30)+({input_size}*8) if 13*(2**30)+({input_size}*8) < 21474836480 else 21474836480 --time 1000+{input_size}/80000 if 1000+{input_size}/80000 < 36000 else 36000 |
|
ID 782: Alpha diversity (phylogenetic) [alpha_phylogenetic]
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-p qiita -N 1 -n 1 --mem 16g --time 6 |
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ID 781: Alpha diversity [alpha]
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-p qiita -N 1 -n 1 --mem 4gb --time 4:00:00 |
|
ID 786: Summarize table [summarize]
|
-p qiita -N 1 -n 1 --mem 4gb --time 00:10:00 |
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ID 773: Pre-fitted sklearn-based taxonomy classifier [classify_sklearn]
|
-p qiita -N 1 -n 1 --mem 45g --time 3-12:00:00 |
|
ID 820: Principal Coordinate Analysis [pcoa]
|
-p qiita -N 1 -n 1 --mem 4gb --time 4:00:00 |
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ID 795: Filter features from a table based on abundance and prevalence [filter_features_conditionally]
|
-p qiita -N 1 -n 1 --mem 1gb --time 00:10:00 |
|
ID 778: Beta diversity rarefaction [beta_rarefaction]
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-p qiita -N 1 -n 1 --mem 16gb --time 10:00:00 |
|
ID 780: Beta diversity [beta]
|
-p qiita -N 1 -n 1 --mem 8gb --time 10:00:00 |
|
ID 802: Nested cross-validated supervised learning regressor. [regress_samples_ncv]
|
-p qiita -N 1 -n 1 --mem 4gb --time 4:00:00 |
|
ID 817: bioenv [bioenv]
|
-p qiita -N 1 -n 1 --mem 6gb --time 1:00:00 |
|
ID 777: Alpha rarefaction curves [alpha_rarefaction]
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-p qiita -N 1 -n 1 --mem (2**34)+(({samples}*{columns}*{input_size})/20000) --time 1500 |
|
ID 800: Convert (and merge) positive numeric metadata (in)to feature table. [metatable]
|
-p qiita -N 1 -n 1 --mem 4gb --time 4:00:00 |
|
ID 814: Filter samples from a distance matrix. [filter_distance_matrix]
|
-p qiita -N 1 -n 1 --mem 4gb --time 4:00:00 |
|
ID 790: Subsample table [subsample]
|
-p qiita -N 1 -n 1 --mem 4gb --time 4:00:00 |
|
ID 805: Taxonomy-based feature table filter. [filter_table]
|
-p qiita -N 1 -n 1 --mem 4gb --time 00:20:00 |
|
ID 822: Paired pairwise distance testing and boxplots [pairwise_distances]
|
-p qiita -N 1 -n 1 --mem 4gb --time 4:00:00 |
|
ID 789: Renames sample or feature ids in a table [rename_ids]
|
-p qiita -N 1 -n 1 --mem 4gb --time 4:00:00 |
|
ID 804: Collapse features by their taxonomy at the specified level [collapse]
|
-p qiita -N 1 -n 1 --mem 4gb --time 4:00:00 |
|
ID 823: Compute first distances or distance from baseline between sequential states [first_distances]
|
-p qiita -N 1 -n 1 --mem 4gb --time 4:00:00 |
|
ID 788: Identify core features in table [core_features]
|
-p qiita -N 1 -n 1 --mem 4gb --time 2:00:00 |
|
ID 803: Visualize taxonomy with an interactive bar plot [barplot]
|
-p qiita -N 1 -n 1 --mem 4gb --time 4:00:00 |
|
ID 824: Run k-nearest-neighbors on a labeled distance matrix. [classify_samples_from_dist]
|
-p qiita -N 1 -n 1 --mem 4gb --time 4:00:00 |
|
ID 784: Convert to relative frequencies [relative_frequency]
|
-p qiita -N 1 -n 1 --mem 4gb --time 4:00:00 |
|
ID 806: Principal Coordinate Analysis Biplot [pcoa_biplot]
|
-p qiita -N 1 -n 1 --mem 4gb --time 4:00:00 |
|
ID 825: UMAP Embedding [embed]
|
-p qiita -N 1 -n 1 --mem 4gb --time 4:00:00 |
|
ID 794: Filter features from table [filter_features]
|
-p qiita -N 1 -n 1 --mem 500mb --time 00:10:00 |
|
ID 809: Compute first differences or difference from baseline between sequential states [first_differences]
|
-p qiita -N 1 -n 1 --mem 4gb --time 4:00:00 |
|
ID 827: Alpha diversity comparisons [alpha_group_significance]
|
-p qiita -N 1 -n 1 --mem 4gb --time 4:00:00 |
|
ID 792: Convert to presence/absence [presence_absence]
|
-p qiita -N 1 -n 1 --mem 4gb --time 4:00:00 |
|
ID 807: Generate interactive volatility plot [volatility]
|
-p qiita -N 1 -n 1 --mem 4gb --time 4:00:00 |
|
ID 828: Alpha diversity correlation [alpha_correlation]
|
-p qiita -N 1 -n 1 --mem 4gb --time 4:00:00 |
|
ID 785: Filter samples from table [filter_samples]
|
-p qiita -N 1 -n 1 --mem 4g --time 15 |
|
ID 810: Paired difference testing and boxplots [pairwise_differences]
|
-p qiita -N 1 -n 1 --mem 4gb --time 4:00:00 |
|
ID 829: Make a confusion matrix from sample classifier predictions. [confusion_matrix]
|
-p qiita -N 1 -n 1 --mem 4gb --time 4:00:00 |
|
ID 787: Generate a heatmap representation of a feature table [heatmap]
|
-p qiita -N 1 -n 1 --mem 4gb --time 4:00:00 |
|
ID 808: Nonparametric microbial interdependence test [nmit]
|
-p qiita -N 1 -n 1 --mem 48gb --time 250:00:00 |
|
ID 830: Filter features against reference [filter_features]
|
-p qiita -N 1 -n 1 --mem 13gb --time 1:00:00 |
|
ID 791: Transpose a feature table. [transpose]
|
-p qiita -N 1 -n 1 --mem 4gb --time 4:00:00 |
|
ID 813: Apply the Mantel test to two distance matrices [mantel]
|
-p qiita -N 1 -n 1 --mem 4gb --time 4:00:00 |
|
ID 793: Rarefy table [rarefy]
|
-p qiita -N 1 -n 1 --mem (2**31)+({input_size}*6) if (2**31)+({input_size}*6) < 13958643712 else 13958643712 --time 40 |
|
ID 818: Uniform Manifold Approximation and Projection [umap]
|
-p qiita -N 1 -n 1 --mem 4gb --time 4:00:00 |
|
ID 797: Mislabelings within dataset [within_dataset]
|
-p qiita -N 1 -n 1 --mem 4gb --time 4:00:00 |
|
ID 816: Beta diversity group significance [beta_group_significance]
|
-p qiita -N 1 -n 1 --mem 4gb --time 4:00:00 |
|
ID 796: Mislabelings against dataset [against_dataset]
|
-p qiita -N 1 -n 1 --mem 4gb --time 4:00:00 |
|
ID 821: adonis PERMANOVA test for beta group significance [adonis]
|
-p qiita -N 1 -n 1 --mem 4gb --time 4:00:00 |
|
ID 798: Remove features from table if they're not present in tree. [filter_table]
|
-p qiita -N 1 -n 1 --mem 4gb --time 4:00:00 |
|
ID 819: t-distributed stochastic neighbor embedding [tsne]
|
-p qiita -N 1 -n 1 --mem 4gb --time 4:00:00 |
|
ID 801: Nested cross-validated supervised learning classifier. [classify_samples_ncv]
|
-p qiita -N 1 -n 1 --mem 64gb --time 30:00:00 |
|
ID 815: Beta diversity correlation [beta_correlation]
|
-p qiita -N 1 -n 1 --mem 4gb --time 4:00:00 |
|
ID 799: Split a feature table into training and testing sets. [split_table]
|
-p qiita -N 1 -n 1 --mem 4gb --time 4:00:00 |
|
ID 811: Linear mixed effects modeling [linear_mixed_effects]
|
-p qiita -N 1 -n 1 --mem 4gb --time 4:00:00 |
|
ID 826: Visualize and Interact with Principal Coordinates Analysis Plots [plot]
|
-p qiita -N 1 -n 1 --mem (2**33)+(2**30)+(({samples}*{columns}*{input_size})/4500000) --time 30 |
|
ID 831: Non V4 16S sequence assessment [non_v4_16s]
|
-p qiita -N 1 -n 1 --mem 4gb --time 4:00:00 |
