|
ID 498: Rarefy table [rarefy]
|
-q qiita -l nodes=1:ppn=1 -l mem=8gb -l walltime=32:00:00 |
|
ID 497: Remove features from table if they're not present in tree. [filter_table]
|
-q qiita -l nodes=1:ppn=1 -l mem=8gb -l walltime=32:00:00 |
|
ID 502: Generate a heatmap representation of a feature table [heatmap]
|
-q qiita -l nodes=1:ppn=1 -l mem=8gb -l walltime=32:00:00 |
|
ID 504: Identify core features in table [core_features]
|
-q qiita -l nodes=1:ppn=1 -l mem=8gb -l walltime=32:00:00 |
|
ID 489: Pre-fitted sklearn-based taxonomy classifier [classify_sklearn]
|
-q qiita -l nodes=1:ppn=5 -l mem=84gb -l walltime=150:00:00 |
|
ID 516: Alpha diversity [alpha]
|
-q qiita -l nodes=1:ppn=1 -l mem=16gb -l walltime=3:00:00 |
|
ID 518: Add pseudocount to table [add_pseudocount]
|
-q qiita -l nodes=1:ppn=1 -l mem=8gb -l walltime=32:00:00 |
|
ID 492: Collapse features by their taxonomy at the specified level [collapse]
|
-q qiita -l nodes=1:ppn=1 -l mem=8gb -l walltime=32:00:00 |
|
ID 529: Principal Coordinate Analysis [pcoa]
|
-q qiita -l nodes=1:ppn=1 -l mem=8gb -l walltime=32:00:00 |
|
ID 501: Convert to presence/absence [presence_absence]
|
-q qiita -l nodes=1:ppn=1 -l mem=8gb -l walltime=32:00:00 |
|
ID 490: Visualize taxonomy with an interactive bar plot [barplot]
|
-q qiita -l nodes=1:ppn=1 -l mem=24gb -l walltime=100:00:00 |
|
ID 505: Summarize table [summarize]
|
-q qiita -l nodes=1:ppn=1 -l mem=8gb -l walltime=32:00:00 |
|
ID 500: Filter features from a table based on abundance and prevalence [filter_features_conditionally]
|
-q qiita -l nodes=1:ppn=1 -l mem=8gb -l walltime=32:00:00 |
|
ID 491: Taxonomy-based feature table filter. [filter_table]
|
-q qiita -l nodes=1:ppn=1 -l mem=8gb -l walltime=32:00:00 |
|
ID 507: Subsample table [subsample]
|
-q qiita -l nodes=1:ppn=1 -l mem=8gb -l walltime=32:00:00 |
|
ID 508: Filter samples from table [filter_samples]
|
-q qiita -l nodes=1:ppn=1 -l mem=8gb -l walltime=32:00:00 |
|
ID 514: Core diversity metrics (phylogenetic and non-phylogenetic) [core_metrics_phylogenetic]
|
-q qiita -l nodes=1:ppn=5 -l mem=40gb -l walltime=35:00:00 |
|
ID 509: Transpose a feature table. [transpose]
|
-q qiita -l nodes=1:ppn=1 -l mem=8gb -l walltime=32:00:00 |
|
ID 506: Convert to relative frequencies [relative_frequency]
|
-q qiita -l nodes=1:ppn=1 -l mem=8gb -l walltime=32:00:00 |
|
ID 513: Alpha diversity (phylogenetic) [alpha_phylogenetic]
|
-q qiita -l nodes=1:ppn=1 -l mem=8gb -l walltime=32:00:00 |
|
ID 517: Beta diversity rarefaction [beta_rarefaction]
|
-q qiita -l nodes=1:ppn=1 -l mem=8gb -l walltime=32:00:00 |
|
ID 521: Generate interactive volatility plot [volatility]
|
-q qiita -l nodes=1:ppn=1 -l mem=8gb -l walltime=32:00:00 |
|
ID 520: Paired difference testing and boxplots [pairwise_differences]
|
-q qiita -l nodes=1:ppn=1 -l mem=8gb -l walltime=32:00:00 |
|
ID 524: Run k-nearest-neighbors on a labeled distance matrix. [classify_samples_from_dist]
|
-q qiita -l nodes=1:ppn=1 -l mem=8gb -l walltime=32:00:00 |
|
ID 526: Compute first distances or distance from baseline between sequential states [first_distances]
|
-q qiita -l nodes=1:ppn=1 -l mem=8gb -l walltime=32:00:00 |
|
ID 530: Beta diversity group significance [beta_group_significance]
|
-q qiita -l nodes=1:ppn=1 -l mem=8gb -l walltime=32:00:00 |
|
ID 532: adonis PERMANOVA test for beta group significance [adonis]
|
-q qiita -l nodes=1:ppn=1 -l mem=8gb -l walltime=32:00:00 |
|
ID 495: Convert (and merge) positive numeric metadata (in)to feature table. [metatable]
|
-q qiita -l nodes=1:ppn=1 -l mem=8gb -l walltime=32:00:00 |
|
ID 496: Split a feature table into training and testing sets. [split_table]
|
-q qiita -l nodes=1:ppn=1 -l mem=8gb -l walltime=32:00:00 |
|
ID 499: Renames sample or feature ids in a table [rename_ids]
|
-q qiita -l nodes=1:ppn=1 -l mem=8gb -l walltime=32:00:00 |
|
ID 510: Beta diversity [beta]
|
-q qiita -l nodes=1:ppn=1 -l mem=40gb -l walltime=400:00:00 |
|
ID 511: Core diversity metrics (non-phylogenetic) [core_metrics]
|
-q qiita -l nodes=1:ppn=5 -l mem=16gb -l walltime=35:00:00 |
|
ID 531: bioenv [bioenv]
|
-q qiita -l nodes=1:ppn=1 -l mem=8gb -l walltime=32:00:00 |
|
ID 527: Beta diversity correlation [beta_correlation]
|
-q qiita -l nodes=1:ppn=1 -l mem=8gb -l walltime=32:00:00 |
|
ID 528: Filter samples from a distance matrix. [filter_distance_matrix]
|
-q qiita -l nodes=1:ppn=1 -l mem=8gb -l walltime=32:00:00 |
|
ID 533: Visualize and Interact with Principal Coordinates Analysis Plots [plot]
|
-q qiita -l nodes=1:ppn=1 -l mem=8gb -l walltime=32:00:00 |
|
ID 535: Alpha diversity correlation [alpha_correlation]
|
-q qiita -l nodes=1:ppn=1 -l mem=8gb -l walltime=32:00:00 |
|
ID 534: Alpha diversity comparisons [alpha_group_significance]
|
-q qiita -l nodes=1:ppn=1 -l mem=15gb -l walltime=100:00:00 |
|
ID 493: Nested cross-validated supervised learning regressor. [regress_samples_ncv]
|
-q qiita -l nodes=1:ppn=1 -l mem=8gb -l walltime=32:00:00 |
|
ID 503: Filter features from table [filter_features]
|
-q qiita -l nodes=1:ppn=1 -l mem=8gb -l walltime=32:00:00 |
|
ID 515: Beta diversity (phylogenetic) [beta_phylogenetic]
|
-q qiita -l nodes=1:ppn=5 -l mem=40gb -l walltime=35:00:00 |
|
ID 512: Alpha rarefaction curves [alpha_rarefaction]
|
-q qiita -l nodes=1:ppn=1 -l mem=40gb -l walltime=400:00:00 |
|
ID 522: Compute first differences or difference from baseline between sequential states [first_differences]
|
-q qiita -l nodes=1:ppn=1 -l mem=8gb -l walltime=32:00:00 |
|
ID 519: Linear mixed effects modeling [linear_mixed_effects]
|
-q qiita -l nodes=1:ppn=1 -l mem=8gb -l walltime=32:00:00 |
|
ID 523: Nonparametric microbial interdependence test [nmit]
|
-q qiita -l nodes=1:ppn=1 -l mem=8gb -l walltime=32:00:00 |
|
ID 525: Paired pairwise distance testing and boxplots [pairwise_distances]
|
-q qiita -l nodes=1:ppn=1 -l mem=8gb -l walltime=32:00:00 |
|
ID 494: Nested cross-validated supervised learning classifier. [classify_samples_ncv]
|
-q qiita -l nodes=1:ppn=1 -l mem=8gb -l walltime=32:00:00 |
