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ID 547: Convert (and merge) positive numeric metadata (in)to feature table. [metatable]
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-q qiita -l nodes=1:ppn=1 -l mem=8gb -l walltime=32:00:00 |
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ID 552: Core diversity metrics (phylogenetic and non-phylogenetic) [core_metrics_phylogenetic]
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-q qiita -l nodes=1:ppn=5 -l mem=40gb -l walltime=35:00:00 |
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ID 589: Principal Coordinate Analysis [pcoa]
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-q qiita -l nodes=1:ppn=1 -l mem=70gb -l walltime=50:00:00 |
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ID 546: Nested cross-validated supervised learning regressor. [regress_samples_ncv]
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-q qiita -l nodes=1:ppn=1 -l mem=8gb -l walltime=32:00:00 |
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ID 551: Alpha rarefaction curves [alpha_rarefaction]
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-q qiita -l nodes=1:ppn=1 -l mem=40gb -l walltime=400:00:00 |
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ID 550: Beta diversity rarefaction [beta_rarefaction]
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-q qiita -l nodes=1:ppn=1 -l mem=8gb -l walltime=32:00:00 |
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ID 554: Core diversity metrics (non-phylogenetic) [core_metrics]
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-q qiita -l nodes=1:ppn=5 -l mem=16gb -l walltime=35:00:00 |
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ID 569: Add pseudocount to table [add_pseudocount]
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-q qiita -l nodes=1:ppn=1 -l mem=8gb -l walltime=32:00:00 |
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ID 572: Visualize taxonomy with an interactive bar plot [barplot]
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-q qiita -l nodes=1:ppn=1 -l mem=24gb -l walltime=100:00:00 |
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ID 574: Nonparametric microbial interdependence test [nmit]
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-q qiita -l nodes=1:ppn=1 -l mem=8gb -l walltime=32:00:00 |
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ID 556: Alpha diversity [alpha]
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-q qiita -l nodes=1:ppn=1 -l mem=16gb -l walltime=30:00:00 |
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ID 544: Pre-fitted sklearn-based taxonomy classifier [classify_sklearn]
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-q qiita -l nodes=1:ppn=5 -l mem=84gb -l walltime=150:00:00 |
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ID 555: Beta diversity (phylogenetic) [beta_phylogenetic]
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-q qiita -l nodes=1:ppn=5 -l mem=50gb -l walltime=35:00:00 |
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ID 559: Convert to presence/absence [presence_absence]
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-q qiita -l nodes=1:ppn=1 -l mem=8gb -l walltime=32:00:00 |
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ID 562: Subsample table [subsample]
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-q qiita -l nodes=1:ppn=1 -l mem=8gb -l walltime=32:00:00 |
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ID 570: Remove features from table if they're not present in tree. [filter_table]
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-q qiita -l nodes=1:ppn=1 -l mem=8gb -l walltime=32:00:00 |
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ID 545: Split a feature table into training and testing sets. [split_table]
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-q qiita -l nodes=1:ppn=1 -l mem=8gb -l walltime=32:00:00 |
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ID 553: Beta diversity [beta]
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-q qiita -l nodes=1:ppn=1 -l mem=40gb -l walltime=400:00:00 |
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ID 558: Filter features from table [filter_features]
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-q qiita -l nodes=1:ppn=1 -l mem=8gb -l walltime=32:00:00 |
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ID 560: Transpose a feature table. [transpose]
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-q qiita -l nodes=1:ppn=1 -l mem=8gb -l walltime=32:00:00 |
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ID 591: Visualize and Interact with Principal Coordinates Analysis Plots [plot]
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-q qiita -l nodes=1:ppn=1 -l mem=8gb -l walltime=32:00:00 |
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ID 568: Convert to relative frequencies [relative_frequency]
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-q qiita -l nodes=1:ppn=1 -l mem=8gb -l walltime=32:00:00 |
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ID 573: Collapse features by their taxonomy at the specified level [collapse]
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-q qiita -l nodes=1:ppn=1 -l mem=8gb -l walltime=32:00:00 |
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ID 590: UMAP Embedding [embed]
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-q qiita -l nodes=1:ppn=1 -l mem=8gb -l walltime=32:00:00 |
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ID 592: Alpha diversity comparisons [alpha_group_significance]
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-q qiita -l nodes=1:ppn=1 -l mem=15gb -l walltime=100:00:00 |
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ID 548: Nested cross-validated supervised learning classifier. [classify_samples_ncv]
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-q qiita -l nodes=1:ppn=1 -l mem=8gb -l walltime=32:00:00 |
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ID 567: Summarize table [summarize]
|
-q qiita -l nodes=1:ppn=1 -l mem=8gb -l walltime=32:00:00 |
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ID 563: Filter features from a table based on abundance and prevalence [filter_features_conditionally]
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-q qiita -l nodes=1:ppn=1 -l mem=8gb -l walltime=32:00:00 |
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ID 575: Linear mixed effects modeling [linear_mixed_effects]
|
-q qiita -l nodes=1:ppn=1 -l mem=8gb -l walltime=32:00:00 |
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ID 549: Alpha diversity (phylogenetic) [alpha_phylogenetic]
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-q qiita -l nodes=1:ppn=1 -l mem=8gb -l walltime=32:00:00 |
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ID 561: Rarefy table [rarefy]
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-q qiita -l nodes=1:ppn=1 -l mem=15gb -l walltime=50:00:00 |
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ID 587: Uniform Manifold Approximation and Projection [umap]
|
-q qiita -l nodes=1:ppn=1 -l mem=8gb -l walltime=32:00:00 |
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ID 564: Filter samples from table [filter_samples]
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-q qiita -l nodes=1:ppn=1 -l mem=25gb -l walltime=50:00:00 |
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ID 582: bioenv [bioenv]
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-q qiita -l nodes=1:ppn=1 -l mem=8gb -l walltime=32:00:00 |
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ID 585: Beta diversity correlation [beta_correlation]
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-q qiita -l nodes=1:ppn=1 -l mem=8gb -l walltime=32:00:00 |
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ID 583: t-distributed stochastic neighbor embedding [tsne]
|
-q qiita -l nodes=1:ppn=1 -l mem=8gb -l walltime=32:00:00 |
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ID 557: Renames sample or feature ids in a table [rename_ids]
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-q qiita -l nodes=1:ppn=1 -l mem=8gb -l walltime=32:00:00 |
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ID 586: Beta diversity group significance [beta_group_significance]
|
-q qiita -l nodes=1:ppn=1 -l mem=8gb -l walltime=32:00:00 |
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ID 565: Generate a heatmap representation of a feature table [heatmap]
|
-q qiita -l nodes=1:ppn=1 -l mem=8gb -l walltime=32:00:00 |
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ID 581: Run k-nearest-neighbors on a labeled distance matrix. [classify_samples_from_dist]
|
-q qiita -l nodes=1:ppn=1 -l mem=8gb -l walltime=32:00:00 |
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ID 566: Identify core features in table [core_features]
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-q qiita -l nodes=1:ppn=1 -l mem=8gb -l walltime=32:00:00 |
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ID 571: Taxonomy-based feature table filter. [filter_table]
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-q qiita -l nodes=1:ppn=1 -l mem=8gb -l walltime=32:00:00 |
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ID 576: Compute first differences or difference from baseline between sequential states [first_differences]
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-q qiita -l nodes=1:ppn=1 -l mem=8gb -l walltime=32:00:00 |
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ID 577: Generate interactive volatility plot [volatility]
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-q qiita -l nodes=1:ppn=1 -l mem=8gb -l walltime=32:00:00 |
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ID 578: Paired difference testing and boxplots [pairwise_differences]
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-q qiita -l nodes=1:ppn=1 -l mem=8gb -l walltime=32:00:00 |
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ID 580: Compute first distances or distance from baseline between sequential states [first_distances]
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-q qiita -l nodes=1:ppn=1 -l mem=8gb -l walltime=32:00:00 |
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ID 579: Paired pairwise distance testing and boxplots [pairwise_distances]
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-q qiita -l nodes=1:ppn=1 -l mem=8gb -l walltime=32:00:00 |
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ID 588: adonis PERMANOVA test for beta group significance [adonis]
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-q qiita -l nodes=1:ppn=1 -l mem=80gb -l walltime=50:00:00 |
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ID 584: Filter samples from a distance matrix. [filter_distance_matrix]
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-q qiita -l nodes=1:ppn=1 -l mem=16gb -l walltime=50:00:00 |
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ID 593: Alpha diversity correlation [alpha_correlation]
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-q qiita -l nodes=1:ppn=1 -l mem=8gb -l walltime=32:00:00 |
