Vaginal Benchmarking - ID 14385

Alias: PLUS Urobiome Vaginal Benchmarking
Abstract: Effects of preservation method on sample yield for vaginal swab samples
Description: Samples of vaginal swabs from volunteers for benchmarking
Owner: mackenzie.m.bryant@gmail.com
Publications:
PI: Rob Knight (UCSD)
EBI: ERP138440 (submitted)
Artifacts
ID Data Type Platform Target Gene Target Subfragment Algorithm
141976     16S Illumina 16S rRNA V4 Trimming (length: 90)
141978     16S Illumina 16S rRNA V4 Trimming (length: 100)
141979     16S Illumina 16S rRNA V4 Trimming (length: 150)
141980     16S Illumina 16S rRNA V4 Pick closed-reference OTUs (reference-seq: /databases/gg/13_8/rep_set/97_otus.fasta) | Trimming (length: 90)
141981     16S Illumina 16S rRNA V4 Pick closed-reference OTUs (reference-seq: /databases/gg/13_8/rep_set/97_otus.fasta) | Trimming (length: 100)
141982     16S Illumina 16S rRNA V4 Pick closed-reference OTUs (reference-seq: /databases/gg/13_8/rep_set/97_otus.fasta) | Trimming (length: 150)
141969     16S Illumina 16S rRNA V4 Split libraries FASTQ
141983     16S Illumina 16S rRNA V4 Deblur 2021.09 (Reference phylogeny for SEPP: Greengenes_13.8, BIOM: all.biom) | Trimming (length: 100)
141984     16S Illumina 16S rRNA V4 Deblur 2021.09 (Reference phylogeny for SEPP: Greengenes_13.8, BIOM: reference-hit.biom) | Trimming (length: 100)
141985     16S Illumina 16S rRNA V4 Deblur 2021.09 (Reference phylogeny for SEPP: Greengenes_13.8, BIOM: reference-hit.biom) | Trimming (length: 90)
141986     16S Illumina 16S rRNA V4 Deblur 2021.09 (Reference phylogeny for SEPP: Greengenes_13.8, BIOM: all.biom) | Trimming (length: 90)
141987     16S Illumina 16S rRNA V4 Deblur 2021.09 (Reference phylogeny for SEPP: Greengenes_13.8, BIOM: reference-hit.biom) | Trimming (length: 150)
141988     16S Illumina 16S rRNA V4 Deblur 2021.09 (Reference phylogeny for SEPP: Greengenes_13.8, BIOM: all.biom) | Trimming (length: 150)
141959     16S Illumina 16S rRNA V4