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Download public BIOM and metadata files
MD5:
0d864d02b5ecb2d096678c17fd2bfcf4
Last update:
05-12-24 01:00:12
BETA: Download Archive files (for example, deblur trees)
MD5:
Last update:
Current version:
2024.02 13eafdf
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NP Ginseng GIO - ID 15017
Alias:
ginseng gio
Abstract:
4 week oral gio with 500 mg/kg/day ginseng
Description:
-
Owner:
chargoni@msu.edu
Publications:
PI:
Rob Quinn (UCSD)
EBI:
ERP156904
(submitted)
Artifacts
ID
Data Type
Platform
Target Gene
Target Subfragment
Algorithm
173208
16S
Illumina
16S rRNA
V3V4
Trimming (length: 250)
192636
16S
Illumina
16S rRNA
V3V4
Trimming (length: 90)
192637
16S
Illumina
16S rRNA
V3V4
Trimming (length: 100)
192642
16S
Illumina
16S rRNA
V3V4
Trimming (length: 150)
192652
16S
Illumina
16S rRNA
V3V4
Pick closed-reference OTUs (reference-seq: /databases/gg/13_8/rep_set/97_otus.fasta) | Trimming (length: 90)
192655
16S
Illumina
16S rRNA
V3V4
Pick closed-reference OTUs (reference-seq: /databases/gg/13_8/rep_set/97_otus.fasta) | Trimming (length: 100)
192683
16S
Illumina
16S rRNA
V3V4
Pick closed-reference OTUs (reference-seq: /databases/gg/13_8/rep_set/97_otus.fasta) | Trimming (length: 150)
173207
16S
Illumina
16S rRNA
V3V4
Split libraries FASTQ
173218
16S
Illumina
16S rRNA
V3V4
Deblur 2021.09 (Reference phylogeny for SEPP: Greengenes_13.8, BIOM: all.biom) | Trimming (length: 250)
173219
16S
Illumina
16S rRNA
V3V4
Deblur 2021.09 (Reference phylogeny for SEPP: Greengenes_13.8, BIOM: reference-hit.biom) | Trimming (length: 250)
192686
16S
Illumina
16S rRNA
V3V4
Deblur 2021.09 (Reference phylogeny for SEPP: Greengenes_13.8, BIOM: reference-hit.biom) | Trimming (length: 90)
192687
16S
Illumina
16S rRNA
V3V4
Deblur 2021.09 (Reference phylogeny for SEPP: Greengenes_13.8, BIOM: all.biom) | Trimming (length: 90)
192688
16S
Illumina
16S rRNA
V3V4
Deblur 2021.09 (Reference phylogeny for SEPP: Greengenes_13.8, BIOM: all.biom) | Trimming (length: 100)
192689
16S
Illumina
16S rRNA
V3V4
Deblur 2021.09 (Reference phylogeny for SEPP: Greengenes_13.8, BIOM: reference-hit.biom) | Trimming (length: 100)
192691
16S
Illumina
16S rRNA
V3V4
Deblur 2021.09 (Reference phylogeny for SEPP: Greengenes_13.8, BIOM: reference-hit.biom) | Trimming (length: 150)
192692
16S
Illumina
16S rRNA
V3V4
Deblur 2021.09 (Reference phylogeny for SEPP: Greengenes_13.8, BIOM: all.biom) | Trimming (length: 150)
173206
16S
Illumina
16S rRNA
V3V4
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