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NP Ginseng GIO - ID 15017

Alias: ginseng gio
Abstract: 4 week oral gio with 500 mg/kg/day ginseng
Description: -
Owner: chargoni@msu.edu
Publications:
PI: Rob Quinn (UCSD)
EBI: ERP156904 (submitted)
Artifacts
ID Data Type Platform Target Gene Target Subfragment Algorithm
173208     16S Illumina 16S rRNA V3V4 Trimming (length: 250)
192636     16S Illumina 16S rRNA V3V4 Trimming (length: 90)
192637     16S Illumina 16S rRNA V3V4 Trimming (length: 100)
192642     16S Illumina 16S rRNA V3V4 Trimming (length: 150)
192652     16S Illumina 16S rRNA V3V4 Pick closed-reference OTUs (reference-seq: /databases/gg/13_8/rep_set/97_otus.fasta) | Trimming (length: 90)
192655     16S Illumina 16S rRNA V3V4 Pick closed-reference OTUs (reference-seq: /databases/gg/13_8/rep_set/97_otus.fasta) | Trimming (length: 100)
192683     16S Illumina 16S rRNA V3V4 Pick closed-reference OTUs (reference-seq: /databases/gg/13_8/rep_set/97_otus.fasta) | Trimming (length: 150)
173207     16S Illumina 16S rRNA V3V4 Split libraries FASTQ
173218     16S Illumina 16S rRNA V3V4 Deblur 2021.09 (Reference phylogeny for SEPP: Greengenes_13.8, BIOM: all.biom) | Trimming (length: 250)
173219     16S Illumina 16S rRNA V3V4 Deblur 2021.09 (Reference phylogeny for SEPP: Greengenes_13.8, BIOM: reference-hit.biom) | Trimming (length: 250)
192686     16S Illumina 16S rRNA V3V4 Deblur 2021.09 (Reference phylogeny for SEPP: Greengenes_13.8, BIOM: reference-hit.biom) | Trimming (length: 90)
192687     16S Illumina 16S rRNA V3V4 Deblur 2021.09 (Reference phylogeny for SEPP: Greengenes_13.8, BIOM: all.biom) | Trimming (length: 90)
192688     16S Illumina 16S rRNA V3V4 Deblur 2021.09 (Reference phylogeny for SEPP: Greengenes_13.8, BIOM: all.biom) | Trimming (length: 100)
192689     16S Illumina 16S rRNA V3V4 Deblur 2021.09 (Reference phylogeny for SEPP: Greengenes_13.8, BIOM: reference-hit.biom) | Trimming (length: 100)
192691     16S Illumina 16S rRNA V3V4 Deblur 2021.09 (Reference phylogeny for SEPP: Greengenes_13.8, BIOM: reference-hit.biom) | Trimming (length: 150)
192692     16S Illumina 16S rRNA V3V4 Deblur 2021.09 (Reference phylogeny for SEPP: Greengenes_13.8, BIOM: all.biom) | Trimming (length: 150)
173206     16S Illumina 16S rRNA V3V4