RISE urogenital microbiome sample collection - ID 15405

Alias: PlusRISE
Abstract: A multicentered cohort study designed to evaluate the distribution of women’s bladder health and lower urinary tract symptoms (LUTS) and to identify the associated factors with bladder health and LUTS.
Description: Urine and vaginal samples from ~113 women
Owner: gail.ackerman@colorado.edu
Publications:
PI: Emily Lukacz (UCSD)
EBI: ERP160469 (submitted)
Artifacts
ID Data Type Platform Target Gene Target Subfragment Algorithm
194044     16S Illumina 16S rRNA V4 Trimming (length: 100)
194045     16S Illumina 16S rRNA V4 Trimming (length: 90)
194046     16S Illumina 16S rRNA V4 Trimming (length: 150)
194140     16S Illumina 16S rRNA V4 Trimming (length: 90)
194141     16S Illumina 16S rRNA V4 Trimming (length: 100)
194142     16S Illumina 16S rRNA V4 Trimming (length: 150)
194049     16S Illumina 16S rRNA V4 Pick closed-reference OTUs (reference-seq: /databases/gg/13_8/rep_set/97_otus.fasta) | Trimming (length: 90)
194052     16S Illumina 16S rRNA V4 Pick closed-reference OTUs (reference-seq: /databases/gg/13_8/rep_set/97_otus.fasta) | Trimming (length: 150)
194053     16S Illumina 16S rRNA V4 Pick closed-reference OTUs (reference-seq: /databases/gg/13_8/rep_set/97_otus.fasta) | Trimming (length: 100)
194143     16S Illumina 16S rRNA V4 Pick closed-reference OTUs (reference-seq: /databases/gg/13_8/rep_set/97_otus.fasta) | Trimming (length: 90)
194144     16S Illumina 16S rRNA V4 Pick closed-reference OTUs (reference-seq: /databases/gg/13_8/rep_set/97_otus.fasta) | Trimming (length: 100)
194145     16S Illumina 16S rRNA V4 Pick closed-reference OTUs (reference-seq: /databases/gg/13_8/rep_set/97_otus.fasta) | Trimming (length: 150)
194043     16S Illumina 16S rRNA V4 Split libraries FASTQ
194139     16S Illumina 16S rRNA V4 Split libraries FASTQ
194047     16S Illumina 16S rRNA V4 Deblur 2021.09 (Reference phylogeny for SEPP: Greengenes_13.8, BIOM: all.biom) | Trimming (length: 100)
194048     16S Illumina 16S rRNA V4 Deblur 2021.09 (Reference phylogeny for SEPP: Greengenes_13.8, BIOM: reference-hit.biom) | Trimming (length: 100)
194050     16S Illumina 16S rRNA V4 Deblur 2021.09 (Reference phylogeny for SEPP: Greengenes_13.8, BIOM: all.biom) | Trimming (length: 90)
194051     16S Illumina 16S rRNA V4 Deblur 2021.09 (Reference phylogeny for SEPP: Greengenes_13.8, BIOM: reference-hit.biom) | Trimming (length: 90)
194063     16S Illumina 16S rRNA V4 Deblur 2021.09 (Reference phylogeny for SEPP: Greengenes_13.8, BIOM: all.biom) | Trimming (length: 150)
194064     16S Illumina 16S rRNA V4 Deblur 2021.09 (Reference phylogeny for SEPP: Greengenes_13.8, BIOM: reference-hit.biom) | Trimming (length: 150)
194163     16S Illumina 16S rRNA V4 Deblur 2021.09 (Reference phylogeny for SEPP: Greengenes_13.8, BIOM: all.biom) | Trimming (length: 90)
194164     16S Illumina 16S rRNA V4 Deblur 2021.09 (Reference phylogeny for SEPP: Greengenes_13.8, BIOM: reference-hit.biom) | Trimming (length: 90)
194169     16S Illumina 16S rRNA V4 Deblur 2021.09 (Reference phylogeny for SEPP: Greengenes_13.8, BIOM: all.biom) | Trimming (length: 100)
194170     16S Illumina 16S rRNA V4 Deblur 2021.09 (Reference phylogeny for SEPP: Greengenes_13.8, BIOM: reference-hit.biom) | Trimming (length: 100)
194172     16S Illumina 16S rRNA V4 Deblur 2021.09 (Reference phylogeny for SEPP: Greengenes_13.8, BIOM: reference-hit.biom) | Trimming (length: 150)
194173     16S Illumina 16S rRNA V4 Deblur 2021.09 (Reference phylogeny for SEPP: Greengenes_13.8, BIOM: all.biom) | Trimming (length: 150)
194041     16S Illumina 16S rRNA V4
194138     16S Illumina 16S rRNA V4